(2007) Whole-genome cartography of estrogen receptor alpha binding sites., PLoS genetics 3, e87. S., Ruan, Y., Bourque, G., Wei, C.-L., and Liu, E. H., Stossi, F., Yeo, A., George, J., Kuznetsov, V. (2007) Integration of biological networks and gene expression data using Cytoscape., Nature protocols 2, 2366–2382. R., Hood, L., Kuiper, M., Sander, C., Schmulevich, I., Schwikowski, B., Warner, G. R., Vailaya, A., Wang, P.-L., Adler, A., Conklin, B. S., Smoot, M., Cerami, E., Kuchinsky, A., Landys, N., Workman, C., Christmas, R., Avila-Campilo, I., Creech, M., Gross, B., Hanspers, K., Isserlin, R., Kelley, R., Killcoyne, S., Lotia, S., Maere, S., Morris, J., Ono, K., Pavlovic, V., Pico, A. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks, Genome Res 13, 2498–2504.Ĭline, M. Click OK. Select Gene Ontology Biological Process in the categories. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. There are couple of parameters based on which you can filter the table by categories and evidence code: Click the Filter enrichment table button with filter icon to access the filters. Shannon, P., Markiel, A., Ozier, O., Baliga, N. (2010) Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps.

Isserlin, R., Merico, D., Alikhani-Koupaei, R., Gramolini, A., Bader, G. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles., Proceedings of the National Academy of Sciences of the United States of America 102, 15545–15550. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nat Protoc 4, 44–57. (2007) The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists, Genome Biol 8, R183. G., Roayaei, J., Stephens, R., Baseler, M. (2006) Microarray data analysis: from disarray to consolidation and consensus., Nature reviews.

Cytoscape clusterprofiler enrichmap